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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_131431661_131433348_F

Intron Information:

Intron Rank:
137605
Intron Class:
major
Intron Phase:
Intron Coordinates:
131431661 - 131433348
Intron Length:
1688

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTTGA
5'SS Class:
major
3'SS Sequence:
GTTCTTCTTATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TATCATCTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1
65.2
37.3
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
82
0.72
0.8
76.8
32
Minor 5ss
36.3
-1.6
2.9
45.7
43.5
Minor BPS
50.5
0.09
1.8
72.62
37.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024104
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038928
131407676 - 131433404
25729