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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_131451297_131451741_F

Intron Information:

Intron Rank:
142538
Intron Class:
major
Intron Phase:
Intron Coordinates:
131451297 - 131451741
Intron Length:
445

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGTGT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCCAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTTTCTTCCAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
79.5
36.8
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
77.4
0.62
0.8
74.6
29.2
Minor 5ss
38.5
-1.3
3.4
55.9
48.3
Minor BPS
54
0.21
2.1
81.38
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026808
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023265
131443832 - 131451975
8144