About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_131451801_131451887_F

Intron Information:

Intron Rank:
142539
Intron Class:
major
Intron Phase:
Intron Coordinates:
131451801 - 131451887
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAAAGTG
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTCCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATACAT
U12 Branch Point Sequence:
ACTTCATTATAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.74
0.9
72.3
37.6
Major BPS
74.9
0.62
1
81.3
29.9
Major PPT
82.6
0.73
0.7
81.1
24.1
Minor 5ss
33.4
-1.9
3.6
46.6
48.7
Minor BPS
52.2
0.15
2
73.05
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026808
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023265
131443832 - 131451975
8144