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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_131489883_131490365_R

Intron Information:

Intron Rank:
154056
Intron Class:
major
Intron Phase:
Intron Coordinates:
131489883 - 131490365
Intron Length:
483

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGCTACT
5'SS Class:
major
3'SS Sequence:
ATTTTTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
ATACATTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.2
71.4
40.3
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
93.9
0.99
0.6
92.8
24.8
Minor 5ss
37.1
-1.5
3
51.8
44.8
Minor BPS
48.5
-0
1.7
65.74
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030371
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030761
131488599 - 131490460
1862