About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_131814696_131819763_R

Intron Information:

Intron Rank:
141168
Intron Class:
major
Intron Phase:
Intron Coordinates:
131814696 - 131819763
Intron Length:
5068

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTAGG
5'SS Class:
major
3'SS Sequence:
TCTTTATTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TCTTCTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.1
0.5
1
62.8
43.3
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
88.7
0.87
0.7
81.1
35.5
Minor 5ss
31.9
-2.1
2.7
39
40.1
Minor BPS
70
0.71
1.5
83.14
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023279
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022187
131814385 - 131820622
6238