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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_132115948_132133829_R

Intron Information:

Intron Rank:
146058
Intron Class:
major
Intron Phase:
Intron Coordinates:
132115948 - 132133829
Intron Length:
17882

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGCTAC
5'SS Class:
major
3'SS Sequence:
TTTCCTTACTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTTCCTTACTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
67.1
34.7
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
81.5
0.71
0.8
81.1
29.7
Minor 5ss
44.8
-0.6
2.8
57.8
47.2
Minor BPS
78
0.86
1.5
86.11
32.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025987
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039472
132115173 - 132161819
46647