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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_13218287_13226037_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13218287 - 13226037
Intron Length:
7751

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTATA
5'SS Class:
major
3'SS Sequence:
TTTTGTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTATTATTC
Flanking Amino Acid:
TSYLEMAAGSEPESVEASPV
Intron Amino Acid Position:
24

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
80.8
33.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
92.6
0.96
0.7
88.3
28.9
Minor 5ss
40.6
-1.1
2.8
47.9
41.8
Minor BPS
54.3
0.11
1.8
68.28
37.3

Associated Gene:

Gene:
KMT2E
Ensembl Gene ID:
ENSAPLG00000003236
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003365
13207878 - 13266893
59016
ENSAPLT00000034463
13218102 - 13265698
47597
ENSAPLT00000032057
13218102 - 13264930
46829