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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_13233208_13234554_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13233208 - 13234554
Intron Length:
1347

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
AATTTTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAA
U12 Branch Point Sequence:
ATAAACATAATT
Flanking Amino Acid:
KEQNIAKCKKAFREGSRKSS
Intron Amino Acid Position:
243

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
80.4
26.8
Major BPS
62
0.3
1
62.3
30.4
Major PPT
80.7
0.69
0.9
77.7
40.7
Minor 5ss
33.7
-1.9
3.2
40.3
40.1
Minor BPS
50.2
0.09
1.8
70.68
39.5

Associated Gene:

Gene:
KMT2E
Ensembl Gene ID:
ENSAPLG00000003236
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034463
13218102 - 13265698
47597
ENSAPLT00000032057
13218102 - 13264930
46829
ENSAPLT00000003365
13207878 - 13266893
59016