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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_132368956_132377813_R

Intron Information:

Intron Rank:
150908
Intron Class:
major
Intron Phase:
Intron Coordinates:
132368956 - 132377813
Intron Length:
8858

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TGTGCTTTTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTATCTAAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
79.6
34.4
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
70.3
0.46
1.1
67.7
42.7
Minor 5ss
36.8
-1.5
3.3
44.3
43.6
Minor BPS
67.6
0.55
1.7
79.58
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028660
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039724
132366677 - 132377884
11208