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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_13239222_13239373_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13239222 - 13239373
Intron Length:
152

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCATA
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTTACATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTCTCTTTTACA
Flanking Amino Acid:
IRRSCTPNAEVRHVIEDGTI
Intron Amino Acid Position:
410

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.8
83.2
30.8
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
75.3
0.57
0.8
72.2
31.5
Minor 5ss
37.5
-1.4
3
48.1
47.6
Minor BPS
70.7
0.65
1.6
78.99
37.5

Associated Gene:

Gene:
KMT2E
Ensembl Gene ID:
ENSAPLG00000003236
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003365
13207878 - 13266893
59016
ENSAPLT00000034463
13218102 - 13265698
47597
ENSAPLT00000032057
13218102 - 13264930
46829