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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_13239484_13240400_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13239484 - 13240400
Intron Length:
917

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TATCTACTTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATCAA
U12 Branch Point Sequence:
CTTTCTTGGATT
Flanking Amino Acid:
TIAFDFDYGNCKYKVDCACL
Intron Amino Acid Position:
446

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.1
0.99
0.8
92.6
23.1
Major BPS
71.2
0.53
1
72.3
32.8
Major PPT
77.6
0.62
0.8
74.9
34.6
Minor 5ss
41.8
-0.9
2.9
57.3
41.2
Minor BPS
63.9
0.52
1.5
79.16
37.6

Associated Gene:

Gene:
KMT2E
Ensembl Gene ID:
ENSAPLG00000003236
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034463
13218102 - 13265698
47597
ENSAPLT00000032057
13218102 - 13264930
46829
ENSAPLT00000003365
13207878 - 13266893
59016