About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_13240663_13242668_F


Intron Information:

Intron Rank:
13

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
13240663 - 13242668

Intron Length:
2006

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CAG|GTATTGACA

5'SS Class:
major

3'SS Sequence:
TTCCATCTTTCAG|G

3'SS Class:
strong_PPT

U2 Branch Point Sequence:
TTTCCAT

U12 Branch Point Sequence:
GCTTCTGTAAAG

Flanking Amino Acid:
PLRLSISNNQEPDFIDDIEE

Intron Amino Acid Position:
534

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
72.4
0.53
1.1
66.9
38

Major BPS
77.3
0.68
1.2
86.7
32.3

Major PPT
83.5
0.75
0.8
80.7
30.9

Minor 5ss
38.7
-1.3
3
49.8
46.1

Minor BPS
48.5
-0.2
2.2
56.87
44.7

Associated Gene:

Gene:
KMT2E

Ensembl Gene ID:

Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

13218102 - 13265698
47597

13207878 - 13266893
59016