Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_132512085_132513041_F

Intron Information:

Intron Rank:

134594

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

132512085 - 132513041

Intron Length:

957

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAACTGGA

5'SS Class:

strong_major

3'SS Sequence:

TGTCTGAAACTAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

AACTTAT

U12 Branch Point Sequence:

TATCCTTGAACT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.2

0.74

1.1

72.4

39.5

Major BPS

74.8

0.62

0.9

63.7

35.1

Major PPT

56.5

0.15

1.1

49.4

Minor 5ss

37.6

-1.4

3.2

49.9

46.3

Minor BPS

70.3

0.71

1.4

84.01

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000022344

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017366

132511535 - 132515014

3480