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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_132514803_132515518_F

Intron Information:

Intron Rank:
134597
Intron Class:
major
Intron Phase:
Intron Coordinates:
132514803 - 132515518
Intron Length:
716

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGAACA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAATAT
U12 Branch Point Sequence:
TTGCACTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
0.9
76.1
32.7
Major BPS
67.5
0.44
1.1
63.7
42.3
Major PPT
88
0.85
0.7
81.7
35.4
Minor 5ss
39.8
-1.1
2.8
50
46
Minor BPS
55.3
0.24
1.8
74.45
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022344
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036865
132511535 - 132515720
4186