About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_13253774_13254518_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13253774 - 13254518
Intron Length:
745

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGATGCTT
5'SS Class:
major
3'SS Sequence:
GATTTTAAAGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTTGTGATT
Flanking Amino Acid:
LLLNDGCSLTDLTTPLKKRR
Intron Amino Acid Position:
858

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
71.4
39.9
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
65.2
0.34
1.1
60.9
43.5
Minor 5ss
31.3
-2.1
3.5
47.3
48.1
Minor BPS
57
0.3
2
81.5
34.7

Associated Gene:

Gene:
KMT2E
Ensembl Gene ID:
ENSAPLG00000003236
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003365
13207878 - 13266893
59016
ENSAPLT00000034463
13218102 - 13265698
47597
ENSAPLT00000032057
13218102 - 13264930
46829