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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_13259996_13261910_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13259996 - 13261910
Intron Length:
1915

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
TTCCCTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAC
U12 Branch Point Sequence:
CGTACTTTAACC
Flanking Amino Acid:
SSEKSEPEVQWTASTSVEQV
Intron Amino Acid Position:
1249

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.8
80.2
28.3
Major BPS
77.3
0.68
1
79.3
29.4
Major PPT
84.7
0.78
0.7
76.7
32
Minor 5ss
40.6
-1
2.8
49.4
41.4
Minor BPS
69.9
0.61
1.3
71.72
39.5

Associated Gene:

Gene:
KMT2E
Ensembl Gene ID:
ENSAPLG00000003236
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034463
13218102 - 13265698
47597
ENSAPLT00000032057
13218102 - 13264930
46829
ENSAPLT00000003365
13207878 - 13266893
59016