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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_132602572_132605138_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
132602572 - 132605138
Intron Length:
2567

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGATC
5'SS Class:
strong_major
3'SS Sequence:
TTTGCACCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAA
U12 Branch Point Sequence:
TGTATCTAAACA
Flanking Amino Acid:
SLLTLSHYSEGLFQKAIIQS
Intron Amino Acid Position:
137

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
1
0.8
86
30.3
Major BPS
76.5
0.66
0.8
75.9
24.9
Major PPT
78
0.63
0.9
71
34.9
Minor 5ss
36.8
-1.5
3.3
51.2
45.7
Minor BPS
61.7
0.36
1.7
72.48
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009880
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010288
132591828 - 132662862
71035