About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_13262000_13262372_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13262000 - 13262372
Intron Length:
373

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
TTATATTTACCT
Flanking Amino Acid:
LSDHRKDKDNEPDSENPEPT
Intron Amino Acid Position:
1279

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
76.6
34.9
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
87.7
0.85
0.7
81.2
36.5
Minor 5ss
36.6
-1.5
2.9
46.4
44.2
Minor BPS
62.2
0.46
1.8
81.67
39.8

Associated Gene:

Gene:
KMT2E
Ensembl Gene ID:
ENSAPLG00000003236
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034463
13218102 - 13265698
47597