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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_13268952_13272690_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13268952 - 13272690
Intron Length:
3739

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGTACCT
5'SS Class:
major
3'SS Sequence:
TTTCTGTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTAAT
U12 Branch Point Sequence:
ATTTGTCTAATA
Flanking Amino Acid:
KYSREFFNRRGELRHITKLK
Intron Amino Acid Position:
628

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.2
0.48
1.1
61.9
42.7
Major BPS
76.7
0.66
1.2
77.9
34.9
Major PPT
88.9
0.88
0.7
83.5
31.6
Minor 5ss
33.3
-1.9
3.4
49.2
46.5
Minor BPS
52.1
0.06
2
70.03
36.7

Associated Gene:

Gene:
SRPK2
Ensembl Gene ID:
ENSAPLG00000004027
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004167
13268767 - 13408616
139850