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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_13288436_13288531_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13288436 - 13288531
Intron Length:
96

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGATTACT
5'SS Class:
major
3'SS Sequence:
TCTGAATTTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATAAAAT
U12 Branch Point Sequence:
GTTCTCTGAATT
Flanking Amino Acid:
EYNLDEPNAKTSVFSGALES
Intron Amino Acid Position:
423

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1
76.1
32.5
Major BPS
61.8
0.29
1.1
67.7
34.6
Major PPT
77.8
0.63
0.9
73.7
40.5
Minor 5ss
34.7
-1.7
2.8
44.2
36.9
Minor BPS
64.9
0.55
1.4
79.05
36.7

Associated Gene:

Gene:
SRPK2
Ensembl Gene ID:
ENSAPLG00000004027
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023097
13268767 - 13408616
139850