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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_13289632_13291140_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13289632 - 13291140
Intron Length:
1509

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTATT
5'SS Class:
major
3'SS Sequence:
ATTAATATTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTTTTTTAAAAT
Flanking Amino Acid:
AVSTAPQQKPVGKISKNKKK
Intron Amino Acid Position:
259

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1.1
84.2
33.6
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
74.7
0.56
1
67.2
42.7
Minor 5ss
44.6
-0.6
2.9
70.4
39.5
Minor BPS
64.2
0.52
1.7
84.29
36.6

Associated Gene:

Gene:
SRPK2
Ensembl Gene ID:
ENSAPLG00000004027
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020028
13268767 - 13419886
151120
ENSAPLT00000047865
13268767 - 13408616
139850
ENSAPLT00000019894
13268767 - 13408616
139850
ENSAPLT00000038440
13268767 - 13408616
139850
ENSAPLT00000004167
13268767 - 13408616
139850
ENSAPLT00000026997
13268767 - 13408616
139850
ENSAPLT00000023097
13268767 - 13408616
139850