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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_132903741_132904301_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
132903741 - 132904301
Intron Length:
561

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGATTGCT
5'SS Class:
strong_major
3'SS Sequence:
ATCCACCTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TTTTTGTTTACT
Flanking Amino Acid:
SVEFPEMMSEKHPFKVGCPR
Intron Amino Acid Position:
779

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
76.8
31.6
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
69.1
0.43
0.9
61.2
34.1
Minor 5ss
30
-2.3
3.2
41.8
44.7
Minor BPS
60.1
0.4
2.3
87.49
38.1

Associated Gene:

Gene:
PGR
Ensembl Gene ID:
ENSAPLG00000003887
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004007
132903672 - 132941869
38198