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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_132904389_132906626_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
132904389 - 132906626
Intron Length:
2238

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTATTACTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTAGCCTTATTT
Flanking Amino Acid:
LTKLMDSMHDLVKQLHLFCL
Intron Amino Acid Position:
750

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.85
0.9
86.1
24.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
83.1
0.74
0.9
74.6
40.1
Minor 5ss
46.2
-0.4
2.8
62.8
42
Minor BPS
65.1
0.55
1.7
80.58
41.6

Associated Gene:

Gene:
PGR
Ensembl Gene ID:
ENSAPLG00000003887
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004007
132903672 - 132941869
38198