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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_13291167_13293319_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13291167 - 13293319
Intron Length:
2153

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGATAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAA
U12 Branch Point Sequence:
GTATATTGAAAA
Flanking Amino Acid:
AGAPPPSGSAVSTAPQQKPV
Intron Amino Acid Position:
250

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
70.3
36.4
Major BPS
79.4
0.73
0.9
69.6
37.5
Major PPT
91.2
0.93
0.6
85.4
29.4
Minor 5ss
43.4
-0.7
2.8
55.2
49
Minor BPS
48.9
-0
1.7
60.75
38.2

Associated Gene:

Gene:
SRPK2
Ensembl Gene ID:
ENSAPLG00000004027
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019894
13268767 - 13408616
139850
ENSAPLT00000038440
13268767 - 13408616
139850
ENSAPLT00000004167
13268767 - 13408616
139850
ENSAPLT00000026997
13268767 - 13408616
139850
ENSAPLT00000023097
13268767 - 13408616
139850
ENSAPLT00000020028
13268767 - 13419886
151120
ENSAPLT00000047865
13268767 - 13408616
139850