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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_132911800_132914828_R

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
132911800 - 132914828
Intron Length:
3029

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
TTCTGGGTGTAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCCT
U12 Branch Point Sequence:
TTTTCCTTTTGT
Flanking Amino Acid:
LYFAPDLILNEQRMKESSFY
Intron Amino Acid Position:
653

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1
71.7
40.1
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
55
0.11
1.2
59.5
45.3
Minor 5ss
36.4
-1.5
2.7
38.9
40.3
Minor BPS
44.9
-0.3
3.8
84
43

Associated Gene:

Gene:
PGR
Ensembl Gene ID:
ENSAPLG00000003887
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004007
132903672 - 132941869
38198