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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_132916649_132924952_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
132916649 - 132924952
Intron Length:
8304

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCTGC
5'SS Class:
strong_major
3'SS Sequence:
TTCTATTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTCTTTTTAACA
Flanking Amino Acid:
KCCQAGMVLGGRKFKKFNKV
Intron Amino Acid Position:
504

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
69.2
38.5
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
89.7
0.89
0.7
88.1
28.7
Minor 5ss
38.8
-1.3
3
50.2
46.4
Minor BPS
79.4
0.92
1
82.25
33.1

Associated Gene:

Gene:
PGR
Ensembl Gene ID:
ENSAPLG00000003887
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004007
132903672 - 132941869
38198