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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_13293486_13298438_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13293486 - 13298438
Intron Length:
4953

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTGCAATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
ATTTCCAAAAAT
Flanking Amino Acid:
IRCVKSIIRQVLQGLDYLHS
Intron Amino Acid Position:
195

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.2
1.04
0.7
90.6
21.2
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
67.8
0.4
1
67.8
38
Minor 5ss
43.9
-0.7
3.2
64.8
46.5
Minor BPS
56
0.27
2
81
40.1

Associated Gene:

Gene:
SRPK2
Ensembl Gene ID:
ENSAPLG00000004027
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023097
13268767 - 13408616
139850
ENSAPLT00000020028
13268767 - 13419886
151120
ENSAPLT00000047865
13268767 - 13408616
139850
ENSAPLT00000019894
13268767 - 13408616
139850
ENSAPLT00000038440
13268767 - 13408616
139850
ENSAPLT00000004167
13268767 - 13408616
139850
ENSAPLT00000026997
13268767 - 13408616
139850