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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_132939422_132940628_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
132939422 - 132940628
Intron Length:
1207

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGGGCG
5'SS Class:
major
3'SS Sequence:
TTTTCTTTTGAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTCTTTTGAAG
Flanking Amino Acid:
QLCPPYLGYVRPDTESSQSS
Intron Amino Acid Position:
414

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
61.7
43
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
84.3
0.77
0.9
86.8
24.4
Minor 5ss
30
-2.3
3.5
39.7
45.8
Minor BPS
56.6
0.06
1.5
64.42
37.4

Associated Gene:

Gene:
PGR
Ensembl Gene ID:
ENSAPLG00000003887
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004007
132903672 - 132941869
38198