About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_13295953_13297631_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13295953 - 13297631
Intron Length:
1679

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGTGGCAG
5'SS Class:
major
3'SS Sequence:
TGATATTCACCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTCTGATTAAAG
Flanking Amino Acid:
CQPSSLQKKEMTYNKIFKEN
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.7
0.35
1
52
40.6
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
67.5
0.39
1
59.8
45.5
Minor 5ss
32.5
-2
3.2
37.7
41.6
Minor BPS
49
-0.2
2.2
61.72
45.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024419
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018733
13295803 - 13297757
1955