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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_132982530_132986438_F

Intron Information:

Intron Rank:
144890
Intron Class:
major
Intron Phase:
Intron Coordinates:
132982530 - 132986438
Intron Length:
3909

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TCTTATGTACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
82.5
37
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
86.1
0.81
0.8
80.9
31.1
Minor 5ss
36.7
-1.5
3.5
55.8
48.4
Minor BPS
46.6
-0.1
2.4
72
45.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028118
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045162
132981699 - 132996416
14718