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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_13298546_13303936_R

Intron Information:

Intron Rank:
7
Intron Class:
minor
Intron Phase:
1
Intron Coordinates:
13298546 - 13303936
Intron Length:
5391

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAC|GTATCCTTT
5'SS Class:
strong_minor
3'SS Sequence:
AATCAAATCCCAG|A
3'SS Class:
strong_BPS
U2 Branch Point Sequence:
TAATCAA
U12 Branch Point Sequence:
TTATCCTTAATC
Flanking Amino Acid:
DFKISGMNGIHVCMVFEVLG
Intron Amino Acid Position:
159

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
53.9
0.09
1.4
62.3
44.7
Major BPS
71.2
0.53
1
72.3
32.8
Major PPT
60.3
0.23
1
48.7
42.8
Minor 5ss
94.6
1.5
0.8
89.3
22.6
Minor BPS
86.9
1.14
0.9
87.45
28.9

Associated Gene:

Gene:
SRPK2
Ensembl Gene ID:
ENSAPLG00000004027
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020028
13268767 - 13419886
151120
ENSAPLT00000047865
13268767 - 13408616
139850
ENSAPLT00000019894
13268767 - 13408616
139850
ENSAPLT00000038440
13268767 - 13408616
139850
ENSAPLT00000004167
13268767 - 13408616
139850
ENSAPLT00000026997
13268767 - 13408616
139850
ENSAPLT00000023097
13268767 - 13408616
139850