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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_132986562_132993862_F

Intron Information:

Intron Rank:
144889
Intron Class:
major
Intron Phase:
Intron Coordinates:
132986562 - 132993862
Intron Length:
7301

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
CTCTTGCATATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTGTGTCAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
67.1
39.6
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
70.7
0.47
0.9
65.2
35.4
Minor 5ss
31.3
-2.1
3.3
34.9
41.1
Minor BPS
48.7
-0
2.3
75.15
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028118
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028213
132958794 - 132996416
37623
ENSAPLT00000045162
132981699 - 132996416
14718