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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_13304025_13304259_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13304025 - 13304259
Intron Length:
235

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
ACTCTTGGTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAA
U12 Branch Point Sequence:
CTTTCCTAAAAT
Flanking Amino Acid:
ALDEIKLLKCVRESDPNDPN
Intron Amino Acid Position:
130

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1.1
78.2
36.4
Major BPS
72.7
0.57
1
72.1
31.1
Major PPT
67.4
0.39
1
65.6
40.4
Minor 5ss
42.3
-0.9
2.8
55.7
41.6
Minor BPS
68.3
0.65
1.8
85.06
41.4

Associated Gene:

Gene:
SRPK2
Ensembl Gene ID:
ENSAPLG00000004027
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020028
13268767 - 13419886
151120
ENSAPLT00000047865
13268767 - 13408616
139850
ENSAPLT00000019894
13268767 - 13408616
139850
ENSAPLT00000038440
13268767 - 13408616
139850
ENSAPLT00000004167
13268767 - 13408616
139850
ENSAPLT00000026997
13268767 - 13408616
139850
ENSAPLT00000023097
13268767 - 13408616
139850