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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_133269819_133270865_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
133269819 - 133270865
Intron Length:
1047

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATTAATT
5'SS Class:
major
3'SS Sequence:
ATTCCTGTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
AATTTATTGACT
Flanking Amino Acid:
EYLDGFGDLSGEFWLGLRKI
Intron Amino Acid Position:
247

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.8
0.44
1
71.8
37.3
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
76.2
0.59
0.9
73.8
36.2
Minor 5ss
45.7
-0.5
2.9
63.6
42
Minor BPS
64
0.52
1.6
79.26
36.2

Associated Gene:

Gene:
ANGPTL5
Ensembl Gene ID:
ENSAPLG00000004584
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004709
133267761 - 133280599
12839