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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_133276597_133277503_R

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
133276597 - 133277503
Intron Length:
907

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTCTTT
5'SS Class:
weak_major
3'SS Sequence:
TTTAAACTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTATTTAAAC
Flanking Amino Acid:
QSSLDYLSNQVNELMNRVLL
Intron Amino Acid Position:
142

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1
73.3
38.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
78.1
0.63
0.9
70.8
39.6
Minor 5ss
70.8
0.7
2.2
82.3
37.4
Minor BPS
70.3
0.62
1.5
80.76
33.2

Associated Gene:

Gene:
ANGPTL5
Ensembl Gene ID:
ENSAPLG00000004584
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004709
133267761 - 133280599
12839