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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_133277608_133278601_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
133277608 - 133278601
Intron Length:
994

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTATGTATT
5'SS Class:
major
3'SS Sequence:
ATTTCTTTCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTAAT
U12 Branch Point Sequence:
ATTTCTTTCAAA
Flanking Amino Acid:
ILRGEKQYMCRNLQNSLVEY
Intron Amino Acid Position:
107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1
77.6
36.9
Major BPS
79.3
0.73
1.1
77.9
34.9
Major PPT
73.6
0.53
1
74.8
33.2
Minor 5ss
50
-0
2.5
74.1
35.5
Minor BPS
60.7
0.33
1.8
74.83
36.6

Associated Gene:

Gene:
ANGPTL5
Ensembl Gene ID:
ENSAPLG00000004584
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004709
133267761 - 133280599
12839