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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_133280120_133280500_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
133280120 - 133280500
Intron Length:
381

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATTT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTCTGAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATTTTCTGAACA
Flanking Amino Acid:
ISNVKPCSSKYLTEQLVSSC
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.2
1.04
0.7
90.6
21.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
73.8
0.54
1
70.3
39.6
Minor 5ss
43.9
-0.7
3.2
64.8
46.5
Minor BPS
75.3
0.79
1.3
82.61
31.3

Associated Gene:

Gene:
ANGPTL5
Ensembl Gene ID:
ENSAPLG00000004584
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004709
133267761 - 133280599
12839