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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_133292227_133294074_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
133292227 - 133294074
Intron Length:
1848

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTTCAA
5'SS Class:
major
3'SS Sequence:
TTCCTAAATACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAA
U12 Branch Point Sequence:
GCTTCCTAAATA
Flanking Amino Acid:
RVKSFLLAEKRAFEERWKQK
Intron Amino Acid Position:
13

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
68.7
37.6
Major BPS
72.7
0.57
1
72.1
31.1
Major PPT
72.7
0.51
1
66.5
37.6
Minor 5ss
39.7
-1.2
2.8
49.9
46.3
Minor BPS
65.9
0.49
1.7
71.68
41

Associated Gene:

Gene:
CEP126
Ensembl Gene ID:
ENSAPLG00000004690
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004817
133292148 - 133319642
27495