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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_133317642_133319518_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
133317642 - 133319518
Intron Length:
1877

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTAGGTATA
5'SS Class:
major
3'SS Sequence:
CATTTTATTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTATTCTCCATT
Flanking Amino Acid:
SGVLQIITPLSVQQCISSPL
Intron Amino Acid Position:
910

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.5
1.1
73.5
37.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
78.9
0.65
0.8
73.6
35.3
Minor 5ss
39.8
-1.1
3.1
52
40.2
Minor BPS
53.1
0.18
2
76.49
40.5

Associated Gene:

Gene:
CEP126
Ensembl Gene ID:
ENSAPLG00000004690
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004827
133284162 - 133319642
35481
ENSAPLT00000004817
133292148 - 133319642
27495