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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_133346899_133348531_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
133346899 - 133348531
Intron Length:
1633

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAGTTTTA
5'SS Class:
major
3'SS Sequence:
ATTTGAATATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
ATCTAATTAACT
Flanking Amino Acid:
KPYQKDEFVWAFFNDPNVNS
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.4
0.43
1.1
67.8
40.1
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
64
0.32
1
61.8
43
Minor 5ss
42
-0.9
3.1
49.1
47.1
Minor BPS
63.5
0.5
1.8
80.92
40.2

Associated Gene:

Gene:
CFAP300
Ensembl Gene ID:
ENSAPLG00000004970
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005139
133346273 - 133365927
19655