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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_133348605_133354440_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
133348605 - 133354440
Intron Length:
5836

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAATTTA
5'SS Class:
major
3'SS Sequence:
CTTTATATTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TTTCCTTTATAT
Flanking Amino Acid:
LSPSGQWTTLGSKVTKIEAT
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
77.4
33.8
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
82.6
0.73
0.9
74
40
Minor 5ss
42.7
-0.8
2.9
49.3
47
Minor BPS
63.3
0.5
1.7
82.79
38.2

Associated Gene:

Gene:
CFAP300
Ensembl Gene ID:
ENSAPLG00000004970
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005139
133346273 - 133365927
19655