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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_133369078_133371377_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
133369078 - 133371377
Intron Length:
2300

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
TCATTCCTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTCAT
U12 Branch Point Sequence:
AATACCTTCATT
Flanking Amino Acid:
PPEPKAHSRQASTDAGTAGA
Intron Amino Acid Position:
36

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
63.9
42.4
Major BPS
75
0.62
1.1
77.2
36
Major PPT
72.9
0.52
1
68.9
37
Minor 5ss
23.2
-3.1
3.2
28.7
43.7
Minor BPS
60.8
0.42
1.8
76.51
40

Associated Gene:

Gene:
YAP1
Ensembl Gene ID:
ENSAPLG00000005062
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005243
133368973 - 133453070
84098
ENSAPLT00000047621
133368729 - 133453070
84342