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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_133371626_133416544_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
133371626 - 133416544
Intron Length:
44919

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTCCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTGAA
U12 Branch Point Sequence:
ACTGTCCTAACT
Flanking Amino Acid:
KTPSGQRYFLNHIDQTTTWQ
Intron Amino Acid Position:
118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
86
23.6
Major BPS
72.1
0.55
1.2
63.4
44.3
Major PPT
85.9
0.81
0.7
84.9
29.9
Minor 5ss
36.8
-1.5
2.7
42.6
38.4
Minor BPS
57.3
0.31
1.8
74.35
42.6

Associated Gene:

Gene:
YAP1
Ensembl Gene ID:
ENSAPLG00000005062
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047621
133368729 - 133453070
84342
ENSAPLT00000005243
133368973 - 133453070
84098