Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_133416661_133424344_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

133416661 - 133424344

Intron Length:

7684

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGCAAA

5'SS Class:

strong_major

3'SS Sequence:

TTCTATATTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTATAT

U12 Branch Point Sequence:

CCGCCATGAACT

Flanking Amino Acid:

VQQNLMNSASGPLPDGWEQA

Intron Amino Acid Position:

157

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.1

0.97

0.8

83.2

30.8

Major BPS

66.7

0.41

1.1

63.2

42.8

Major PPT

83.1

0.74

0.8

77.6

Minor 5ss

38.7

-1.3

2.8

48.1

47.6

Minor BPS

48.9

-0

1.8

63.52

46.1

Associated Gene:

Gene:

YAP1

Ensembl Gene ID:

ENSAPLG00000005062

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005243

133368973 - 133453070

84098