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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_133436803_133438323_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
133436803 - 133438323
Intron Length:
1521

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGCCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTACTCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATTTTTACTC
Flanking Amino Acid:
RLKHQELLRQALRNINPSTA
Intron Amino Acid Position:
256

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
68.4
38.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
83.1
0.74
0.7
82.3
28.3
Minor 5ss
25.6
-2.8
3
30.5
42.8
Minor BPS
61.1
0.33
1.5
70
36.1

Associated Gene:

Gene:
YAP1
Ensembl Gene ID:
ENSAPLG00000005062
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005243
133368973 - 133453070
84098