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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_133436803_133446933_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
133436803 - 133446933
Intron Length:
10131

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGCCA
5'SS Class:
strong_major
3'SS Sequence:
ACTCCCGTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTCTCCTCATTT
Flanking Amino Acid:
RLKHQELLRQELALRSQLPT
Intron Amino Acid Position:
285

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
68.4
38.2
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
69.6
0.44
0.9
65.9
35.2
Minor 5ss
25.6
-2.8
3
30.5
42.8
Minor BPS
61.2
0.43
1.8
79.99
42.5

Associated Gene:

Gene:
YAP1
Ensembl Gene ID:
ENSAPLG00000005062
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047621
133368729 - 133453070
84342