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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_133438372_133446933_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
133438372 - 133446933
Intron Length:
8562

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGCTCT
5'SS Class:
strong_major
3'SS Sequence:
ACTCCCGTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTCTCCTCATTT
Flanking Amino Acid:
PSTANSPKHQELALRSQLPT
Intron Amino Acid Position:
272

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
72.3
40.1
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
69.6
0.44
0.9
65.9
35.2
Minor 5ss
45.1
-0.5
3.2
65.3
46.1
Minor BPS
61.2
0.43
1.8
79.99
42.5

Associated Gene:

Gene:
YAP1
Ensembl Gene ID:
ENSAPLG00000005062
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005243
133368973 - 133453070
84098