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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_133494304_133495027_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
133494304 - 133495027
Intron Length:
724

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAACAC
5'SS Class:
strong_major
3'SS Sequence:
TTGTGTTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGATAAT
U12 Branch Point Sequence:
TTGTGTTTTACA
Flanking Amino Acid:
QARFPHLLEQLLSTSDTPVD
Intron Amino Acid Position:
352

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
68.4
36.7
Major BPS
72.6
0.56
1.2
72.3
40.4
Major PPT
85.5
0.8
0.9
79.9
37.7
Minor 5ss
31.6
-2.1
3.2
41.7
45
Minor BPS
54.2
0.13
2.1
70.62
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005387
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005609
133491877 - 133499061
7185