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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_133496358_133497581_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
133496358 - 133497581
Intron Length:
1224

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCATA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTATTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
CTGTTTCTAACA
Flanking Amino Acid:
KERQFEEVASDDLTLIRKNR
Intron Amino Acid Position:
449

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
0.9
79.7
35.3
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
85.6
0.8
0.8
77.6
35.4
Minor 5ss
49
-0.1
2.5
65.8
45.4
Minor BPS
56.9
0.21
1.7
66.89
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005387
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005609
133491877 - 133499061
7185