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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_133507541_133509341_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
133507541 - 133509341
Intron Length:
1801

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
GTTTCTATTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
AGAACATTAATT
Flanking Amino Acid:
HSRRGIQYRTIDEHDAII*
Intron Amino Acid Position:
179

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
1
84.3
27.2
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
83.5
0.75
0.8
77.2
35.8
Minor 5ss
47.2
-0.3
2.8
66.2
38.1
Minor BPS
57.7
0.32
1.6
70.71
39.5

Associated Gene:

Gene:
TMEM123
Ensembl Gene ID:
ENSAPLG00000005784
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005979
133507516 - 133522787
15272